Using Plugin (Shortcodes Ultimate) we can create or make shortcode for wordpress custom page template.

1. create your custom page template without including header and footer.
2. Install the plugin(find link below) into wordpress site.
3. Activate it.
4. Go to plugin Shortcodes Ultimate › Available shortcodes.
5. You can find the variety of filter options in that click Other will find Template open that.
6. In shortcode section add the name of your custom template([su_template name=”name-of-your-template.php”]) with or without php extentions.
7. Use template file name (with optional .php extension). If you need to use templates from theme sub-folder, use relative path. Example values: page, page.php, includes/page.php
8. Now copy the whole shortcode and paste it into the page or post you want.